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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
22
ChIP-seq
8
ATAC-seq
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
22
DNA binding
9
DNA accessibility
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
5
control
4
transcription factor
Date released
66
February, 2021
16
October, 2019
2
July, 2019
1
November, 2017
Available data
93
bam
78
bigWig
54
tsv
29
bed narrowPeak
17
bigBed narrowPeak
bed broadPeak
8
bigBed broadPeak
6
tagAlign
4
bed bed3+
3
fastq
1
tar
Organism
85
Homo sapiens
Biosample type
tissue
66
cell line
19
primary cell
Organ
479
epithelium
435
pancreas
367
liver
129
connective tissue
87
vasculature
85
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
37
embryo
16
vein
13
musculature of body
7
brain
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
85
AMP
Genome assembly (visualization)
78
hg19
76
GRCh38
Lab
85
AMP-T2D consortium
assay_title!
Hi-C
biosample_type!
tissue
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
ChIP-seq
ATAC-seq
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
15
1
brain microvascular endothelial cell
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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