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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
26
ChIP-seq
8
ATAC-seq
4
DNase-seq
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
54
Transcription
26
DNA binding
13
DNA accessibility
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
20
October, 2019
3
November, 2017
2
July, 2019
2
June, 2019
1
May, 2021
Available data
93
bam
78
bigWig
54
tsv
29
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
4
bed bed3+
3
fastq
1
tar
Organism
94
Homo sapiens
Biosample type
tissue
66
cell line
28
primary cell
Organ
501
epithelium
436
pancreas
427
liver
136
connective tissue
99
vasculature
93
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
20
vein
18
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
93
AMP
1
T1D
Genome assembly (visualization)
85
hg19
82
GRCh38
Lab
93
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assay_title!
Hi-C
biosample_type!
tissue
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
megakaryocyte
1
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