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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
Hi-C
1
RRBS
1
small RNA-seq
Assay category
77
DNA binding
26
DNA accessibility
24
Transcription
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
chromatin remodeller
Date released
66
August, 2017
17
June, 2019
13
February, 2023
11
February, 2021
7
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
93
bam
86
bigWig
60
bed narrowPeak
56
fastq
21
tsv
20
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
134
Homo sapiens
Biosample type
tissue
95
in vitro differentiated cells
38
primary cell
1
stem cell
Organ
500
epithelium
436
pancreas
406
liver
134
connective tissue
99
vasculature
93
blood vessel
80
heart
68
artery
59
blood
59
bodily fluid
55
kidney
37
embryo
20
vein
18
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
0
limb
Project
133
AMP
1
T1D
Genome assembly (visualization)
104
hg19
84
GRCh38
Lab
129
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
Hi-C
biosample_type!
tissue
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
65
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
2
5
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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