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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
total RNA-seq
136
ChIP-seq
63
ATAC-seq
10
pCHi-C
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
181
Transcription
136
DNA binding
65
DNA accessibility
1
DNA sequencing
Target of assay
69
histone
69
histone modification
36
broad histone mark
36
transcription factor
34
control
33
narrow histone mark
7
RNA binding protein
7
recombinant protein
3
nucleotide modification
Date released
153
May, 2021
85
August, 2021
56
February, 2021
35
October, 2019
22
February, 2023
20
November, 2019
17
March, 2020
14
August, 2017
6
November, 2020
2
December, 2019
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
807
bam
724
bigWig
fastq
524
bed narrowPeak
372
bigBed narrowPeak
198
tsv
60
bed broadPeak
60
bigBed broadPeak
54
tagAlign
27
bed bed3+
7
bed bedgraph
6
bed bed3
4
txt
3
bedpe bed3+
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
vcf
Organism
411
Homo sapiens
Biosample type
2252
tissue
642
primary cell
249
in vitro differentiated cells
166
cell line
6
stem cell
Organ
93
pancreas
83
epithelium
67
heart
66
artery
66
blood vessel
vasculature
42
connective tissue
33
liver
19
kidney
10
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
404
AMP
9
T1D
2
community
Genome assembly (visualization)
271
hg19
225
GRCh38
Lab
315
AMP-T2D consortium
52
Kyle Gaulton, UCSD
33
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
198
inconsistent ontology term
2
audit script error
1
inconsistent replicate
assay_title!
Hi-C
files.file_type!
fastq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
415 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
6
1
neural progenitor cell
7
21
10
adipocyte
5
14
8
1
cardiac precursors (cardiac muscle cell)
19
1
+ See 21 more…
cell line
EndoC_BH1
33
15
19
6
2
3
2
1
HepG2
9
18
1
2
2
1
Panc1
13
1
H1-hESC
8
RCC 7860 HIF1a re-expression
1
4
+ See 13 more…
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