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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
676
ChIP-seq
197
total RNA-seq
63
ATAC-seq
11
pCHi-C
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
WGBS
1
whole genome sequencing assay
Assay category
676
DNA binding
199
Transcription
66
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
406
transcription factor
150
histone
150
histone modification
118
control
89
recombinant protein
76
RNA binding protein
75
broad histone mark
74
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
153
May, 2021
85
August, 2021
68
August, 2017
61
November, 2018
56
February, 2021
43
December, 2017
39
February, 2018
35
October, 2019
27
December, 2018
23
January, 2019
21
February, 2023
20
November, 2019
17
March, 2020
6
November, 2020
5
January, 2018
2
December, 2019
1
August, 2018
1
May, 2020
Available data
807
bam
724
bigWig
567
fastq
524
bed narrowPeak
372
bigBed narrowPeak
198
tsv
60
bed broadPeak
60
bigBed broadPeak
54
tagAlign
27
bed bed3+
7
bed bedgraph
6
bed bed3
3
bedpe bed3+
3
tar
3
txt
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
vcf
Organism
978
Homo sapiens
Biosample type
2620
tissue
1045
primary cell
588
cell line
390
in vitro differentiated cells
8
stem cell
Organ
414
liver
101
epithelium
97
connective tissue
92
pancreas
67
heart
66
artery
66
blood vessel
vasculature
61
blood
61
bodily fluid
37
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
969
AMP
9
T1D
Genome assembly (visualization)
756
hg19
664
GRCh38
4
hg18
Lab
880
AMP-T2D consortium
52
Kyle Gaulton, UCSD
33
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
202
inconsistent ontology term
2
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
19
missing controlled_by
Audit category:
43
inconsistent control read length
8
inconsistent control run_type
assay_title!
Hi-C
organ_slims!
vasculature
BIOSAMPLE
ASSAY
978 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
MeRIP-seq
STARR-seq
Capture-C
GRO-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
single cell RNA-seq
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
EndoC_BH1
15
33
19
6
2
3
2
GM12878
60
1
Panc1
13
1
H1-hESC
8
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in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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