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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
5
total RNA-seq
Hi-C
1
WGBS
Assay category
412
DNA binding
5
Transcription
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
narrow histone mark
2
other context
2
other post-translational modification
Date released
308
November, 2017
61
November, 2018
27
December, 2018
22
January, 2019
Available data
565
bam
502
bigWig
418
fastq
386
bed narrowPeak
345
bigBed narrowPeak
119
tsv
53
bed broadPeak
53
bigBed broadPeak
15
tagAlign
3
tar
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
418
Homo sapiens
Biosample type
418
cell line
369
primary cell
349
tissue
108
in vitro differentiated cells
3
stem cell
Organ
359
liver
59
blood
59
bodily fluid
Project
418
AMP
Genome assembly (visualization)
359
hg19
314
GRCh38
Lab
418
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
assay_title!
Hi-C
month_released!
November, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
418 results
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ChIP-seq
total RNA-seq
WGBS
cell line
HepG2
353
5
1
GM12878
59
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