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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
ChIP-seq
113
total RNA-seq
28
ATAC-seq
6
pCHi-C
5
STARR-seq
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
330
DNA binding
115
Transcription
30
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
310
transcription factor
89
recombinant protein
control
55
RNA binding protein
37
histone
37
histone modification
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
244
November, 2017
93
February, 2021
41
November, 2018
39
August, 2021
21
May, 2021
20
October, 2019
13
November, 2019
11
March, 2020
6
February, 2023
5
January, 2019
3
November, 2020
2
March, 2023
1
May, 2020
1
October, 2022
Available data
433
bigWig
432
bam
330
bed narrowPeak
290
fastq
281
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
16
tagAlign
3
tar
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
496
Homo sapiens
Biosample type
2572
tissue
1034
primary cell
500
cell line
350
in vitro differentiated cells
9
stem cell
Organ
319
liver
79
pancreas
73
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
45
blood
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
489
AMP
9
T1D
2
community
Genome assembly (visualization)
439
hg19
391
GRCh38
Lab
461
AMP-T2D consortium
29
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
83
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
Hi-C
organ_slims!
bodily fluid
target.investigated_as!
chromatin remodeller
control
BIOSAMPLE
ASSAY
500 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
298
14
1
2
2
1
1
EndoC_BH1
13
33
19
3
3
2
2
1
smooth muscle cell of the coronary artery
4
52
8
H1-hESC
8
Panc1
7
1
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