Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
120
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
6
single cell RNA-seq
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
120
DNA binding
82
DNA accessibility
6
DNA methylation
Target of assay
74
histone
74
histone modification
41
broad histone mark
33
narrow histone mark
30
control
18
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
40
May, 2021
38
November, 2019
24
May, 2022
18
February, 2023
8
January, 2021
8
March, 2020
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
October, 2017
4
June, 2019
4
March, 2019
4
November, 2020
3
October, 2019
2
May, 2019
1
August, 2021
1
August, 2022
1
February, 2020
Available data
432
bam
375
bigWig
275
tsv
213
fastq
125
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
19
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
Organism
497
Homo sapiens
Biosample type
501
tissue
343
primary cell
90
cell line
3
in vitro differentiated cells
Organ
644
connective tissue
504
pancreas
489
adipose tissue
375
liver
311
heart
298
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
118
limb
76
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
474
AMP
30
T1D
Genome assembly (visualization)
412
hg19
388
GRCh38
Lab
443
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
Hi-C
BIOSAMPLE
ASSAY
504 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
50
58
7
1
6
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
2
1
1
1
endocrine pancreas
16
in vitro differentiated cells
pancreatic PP cell
3
Download