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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
135
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
137
Transcription
38
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
131
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
38
August, 2021
26
February, 2021
13
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
290
bam
253
bigWig
141
fastq
130
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
3
bedpe bed3+
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
382
Homo sapiens
Biosample type
2451
tissue
744
primary cell
592
cell line
382
in vitro differentiated cells
10
stem cell
Organ
93
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
heart
Project
382
AMP
Genome assembly (visualization)
285
hg19
264
GRCh38
4
hg18
Lab
335
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
Hi-C
lab.title!
Klaus Kaestner, Upenn
Struan F.A. Grant, CHOP
organ_slims!
heart
BIOSAMPLE
ASSAY
382 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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