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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
6
ChIP-seq
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
27
DNA accessibility
6
DNA binding
2
Transcription
Target of assay
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
1
control
Date released
24
June, 2019
3
August, 2021
3
December, 2017
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
612
bam
612
bigWig
413
fastq
297
bed narrowPeak
274
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
36
Homo sapiens
Biosample type
205
tissue
33
primary cell
25
in vitro differentiated cells
3
stem cell
2
cell line
Organ
19
epithelium
10
kidney
7
connective tissue
6
vasculature
5
brain
5
liver
4
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
Project
36
AMP
Genome assembly (visualization)
33
GRCh38
29
hg19
Lab
34
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_title!
Hi-C
month_released!
March, 2023
BIOSAMPLE
ASSAY
36 results
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DNase-seq
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 18 more…
stem cell
hESC
3
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