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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
174
ChIP-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
429
Transcription
285
DNA accessibility
174
DNA binding
57
DNA methylation
Target of assay
137
histone
137
histone modification
71
broad histone mark
66
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
122
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
47
August, 2017
47
June, 2019
43
April, 2018
33
October, 2019
22
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
596
bigWig
594
bam
406
fastq
289
bed narrowPeak
263
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
tagAlign
46
bed broadPeak
46
bigBed broadPeak
30
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
962
Homo sapiens
Biosample type
2213
tissue
962
primary cell
578
cell line
348
in vitro differentiated cells
10
stem cell
Organ
392
epithelium
340
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
heart
9
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
521
AMP
321
HPAP
120
T1D
Genome assembly (visualization)
507
hg19
424
GRCh38
Lab
486
AMP-T2D consortium
321
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
Audit category:
48
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
Hi-C
files.file_type!
tagAlign
month_released!
August, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
962 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
10
13
31
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
monocyte
54
15
1
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
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