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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
188
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
17
pCHi-C
Hi-C
10
RRBS
7
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
252
DNA accessibility
248
DNA binding
184
Transcription
52
DNA methylation
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
June, 2019
47
September, 2018
41
February, 2021
31
October, 2019
9
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
2
November, 2020
1
November, 2018
Available data
562
bigWig
554
bam
409
fastq
tsv
248
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
9
bed bed3+
2
csv
1
bed bed3
1
tar
Organism
753
Homo sapiens
Biosample type
1443
tissue
753
primary cell
539
cell line
259
in vitro differentiated cells
6
stem cell
Organ
263
epithelium
235
pancreas
27
vasculature
23
blood vessel
20
vein
17
kidney
10
brain
8
blood
8
bodily fluid
6
connective tissue
6
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
330
AMP
315
HPAP
108
T1D
Genome assembly (visualization)
327
hg19
236
GRCh38
Lab
315
Klaus Kaestner, Upenn
295
AMP-T2D consortium
143
Kyle Gaulton, UCSD
Audit category:
27
audit script error
12
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
Hi-C
files.file_type!
tsv
month_released!
June, 2019
organ_slims!
limb
BIOSAMPLE
ASSAY
753 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
exocrine cell
39
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