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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
single cell RNA-seq
70
ChIP-seq
28
total RNA-seq
22
ATAC-seq
Assay category
102
Transcription
70
DNA binding
22
DNA accessibility
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
72
September, 2018
41
August, 2017
37
July, 2018
33
April, 2018
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
194
bam
189
fastq
182
bigWig
102
tsv
68
bed narrowPeak
22
bigBed narrowPeak
Organism
194
Homo sapiens
Biosample type
501
tissue
194
primary cell
90
cell line
3
in vitro differentiated cells
Organ
250
epithelium
194
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
194
AMP
Genome assembly (visualization)
182
GRCh38
182
hg19
Lab
194
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
Hi-C
lab.title!
Klaus Kaestner, Upenn
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
194 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
pancreatic beta cell
12
13
10
7
pancreatic alpha cell
12
13
10
6
pancreatic ductal cell
10
13
4
4
pancreatic acinar cell
12
8
4
5
pancreatic endocrine cell
23
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