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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
4
DNase-seq
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
17
DNA binding
5
DNA accessibility
2
Transcription
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
20
October, 2019
2
July, 2019
2
June, 2019
Available data
24
bam
19
bigWig
15
bed narrowPeak
15
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
2
tsv
1
tar
Organism
24
Homo sapiens
Biosample type
132
tissue
66
cell line
24
primary cell
Organ
399
epithelium
343
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
24
AMP
Genome assembly (visualization)
18
hg19
16
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
brain
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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