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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
217
ChIP-seq
197
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
283
DNA accessibility
217
DNA binding
57
DNA methylation
Target of assay
196
histone
196
histone modification
106
broad histone mark
90
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
554
bigWig
542
bam
342
fastq
270
tsv
256
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
84
bigBed narrowPeak
33
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
1010
Homo sapiens
Biosample type
2392
tissue
1010
primary cell
343
cell line
322
in vitro differentiated cells
10
stem cell
Organ
364
epithelium
302
pancreas
38
connective tissue
36
kidney
27
vasculature
24
blood vessel
20
vein
14
musculature of body
13
heart
13
liver
9
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
485
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
563
hg19
487
GRCh38
Lab
450
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
54
inconsistent ontology term
27
audit script error
Audit category:
32
missing controlled_by
assay_title!
Hi-C
month_released!
August, 2017
November, 2017
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
1010 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
pancreatic beta cell
21
22
12
16
CD8-positive, alpha-beta T cell
4
33
2
1
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