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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
ChIP-seq
242
total RNA-seq
199
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
383
Transcription
284
DNA accessibility
272
DNA binding
56
DNA methylation
Target of assay
233
histone
233
histone modification
121
broad histone mark
112
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
49
June, 2019
48
February, 2021
July, 2018
43
April, 2018
32
October, 2019
25
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
548
bigWig
545
bam
361
fastq
286
bed narrowPeak
217
tsv
153
zippedFastqFolder
104
bigBed narrowPeak
96
tagAlign
46
bed broadPeak
46
bigBed broadPeak
27
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
1012
Homo sapiens
Biosample type
2225
tissue
1012
primary cell
375
in vitro differentiated cells
259
cell line
10
stem cell
Organ
366
epithelium
306
pancreas
36
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
liver
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
487
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
555
hg19
473
GRCh38
Lab
452
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
47
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
Hi-C
month_released!
July, 2018
organ_slims!
eye
liver
BIOSAMPLE
ASSAY
1012 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
5
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
3
16
CD8-positive, alpha-beta T cell
33
4
2
1
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