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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
6
DNase-seq
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
17
DNA binding
7
DNA accessibility
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
control
RNA binding protein
2
transcription factor
Date released
18
October, 2019
4
June, 2019
3
July, 2019
2
November, 2017
Available data
26
bam
23
bigWig
19
bed narrowPeak
19
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
6
bed bed3+
2
fastq
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
27
Homo sapiens
Biosample type
113
tissue
64
cell line
27
primary cell
Organ
373
epithelium
331
pancreas
34
connective tissue
31
kidney
27
vasculature
23
blood vessel
18
vein
12
liver
12
musculature of body
10
heart
9
brain
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
27
AMP
Genome assembly (visualization)
23
hg19
20
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
target.investigated_as!
RNA binding protein
control
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
15
2
1
choroid plexus epithelial cell
1
1
1
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
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