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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
881
total RNA-seq
791
ChIP-seq
247
ATAC-seq
180
single cell RNA-seq
142
DNase-seq
87
RNA microarray
28
snATAC-seq
26
WGBS
25
pCHi-C
16
small RNA-seq
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1077
Transcription
791
DNA binding
421
DNA accessibility
37
DNA methylation
Target of assay
552
histone modification
551
histone
282
narrow histone mark
269
broad histone mark
147
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
227
August, 2021
May, 2020
172
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
90
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1600
bam
1511
bigWig
926
tsv
865
bed narrowPeak
477
bigBed narrowPeak
377
fastq
188
tagAlign
177
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
6
csv
bed bed3
1
tagAlign bed3+
Organism
2436
Homo sapiens
Biosample type
2445
tissue
930
primary cell
656
cell line
385
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
501
pancreas
488
adipose tissue
310
heart
298
kidney
264
brain
167
liver
154
bone element
132
blood vessel
132
vasculature
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2348
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1601
GRCh38
1473
hg19
Lab
2096
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
Hi-C
files.file_type!
bed bed3
month_released!
May, 2020
organ_slims!
limb
BIOSAMPLE
ASSAY
2445 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
70
68
6
1
7
4
1
1
4
adipose tissue
382
2
3
3
1
kidney
49
27
75
64
13
6
1
1
liver
24
95
20
1
2
3
1
1
1
bone element
84
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