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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
849
total RNA-seq
248
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1045
Transcription
907
DNA binding
458
DNA accessibility
38
DNA methylation
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
284
August, 2017
241
October, 2019
227
August, 2021
193
May, 2020
163
June, 2019
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
73
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1725
bam
1598
bigWig
976
bed narrowPeak
902
tsv
561
bigBed narrowPeak
375
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
1
bed bed3
1
tagAlign bed3+
Organism
2474
Homo sapiens
Biosample type
2483
tissue
1029
primary cell
658
cell line
390
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
381
pancreas
360
liver
310
heart
298
kidney
265
brain
bone element
132
blood vessel
132
vasculature
118
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2386
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1677
GRCh38
1558
hg19
Lab
2134
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
7
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
Hi-C
files.file_type!
bedpe
month_released!
July, 2018
organ_slims!
bone element
BIOSAMPLE
ASSAY
2483 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
2
382
3
3
1
liver
145
167
20
1
2
3
1
1
1
islet of Langerhans
71
172
68
6
1
7
4
1
1
4
kidney
27
49
75
64
13
6
1
1
heart left ventricle
35
3
2
18
3
4
1
1
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