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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
514
total RNA-seq
463
ChIP-seq
253
ATAC-seq
180
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
Hi-C
14
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
708
Transcription
463
DNA binding
282
DNA accessibility
32
DNA methylation
Target of assay
285
histone modification
284
histone
205
narrow histone mark
163
control
79
broad histone mark
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
226
August, 2021
207
August, 2017
194
October, 2019
193
May, 2020
159
February, 2021
July, 2018
94
February, 2023
66
May, 2022
61
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
38
November, 2019
32
March, 2020
25
November, 2017
23
February, 2020
22
May, 2019
19
April, 2020
16
April, 2019
16
October, 2017
14
May, 2023
12
December, 2017
11
October, 2018
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
1351
bam
1233
bigWig
971
bed narrowPeak
561
tsv
bigBed narrowPeak
332
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1600
Homo sapiens
Biosample type
1602
tissue
919
primary cell
372
in vitro differentiated cells
303
cell line
10
stem cell
Organ
537
connective tissue
adipose tissue
319
pancreas
311
liver
222
heart
211
kidney
158
bone element
149
brain
70
blood vessel
70
vasculature
53
eye
48
artery
38
musculature of body
34
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1505
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
775
GRCh38
721
hg19
Lab
1253
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
11
missing controlled_by
assay_title!
Hi-C
files.file_type!
bigBed narrowPeak
month_released!
July, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1602 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
172
71
68
6
7
4
1
4
liver
167
107
20
1
1
3
1
1
kidney
49
9
75
64
6
1
bone element
84
bone tissue
58
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