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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
992
total RNA-seq
530
ChIP-seq
257
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1188
Transcription
530
DNA binding
286
DNA accessibility
38
DNA methylation
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
227
August, 2021
194
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
71
July, 2019
66
May, 2022
47
September, 2023
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1867
bam
1732
bigWig
1038
tsv
982
bed narrowPeak
bigBed narrowPeak
375
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2157
Homo sapiens
Biosample type
2160
tissue
763
primary cell
282
cell line
239
in vitro differentiated cells
10
stem cell
Organ
537
connective tissue
478
adipose tissue
402
pancreas
311
liver
220
heart
211
kidney
158
bone element
149
brain
70
blood vessel
70
vasculature
53
eye
48
artery
38
musculature of body
34
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2064
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1266
GRCh38
1213
hg19
Lab
1813
AMP-T2D consortium
141
Katalin Susztak, Upenn
50
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
assay_title!
Hi-C
files.file_type!
bigBed narrowPeak
month_released!
May, 2021
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
2160 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
256
71
68
6
7
4
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
kidney
49
9
75
64
6
1
bone element
84
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