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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
97
total RNA-seq
27
ATAC-seq
10
WGBS
8
DNase-seq
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
211
DNA binding
103
Transcription
37
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
67
histone modification
66
histone
65
control
39
broad histone mark
27
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
48
December, 2017
24
May, 2022
24
November, 2018
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
2
July, 2018
March, 2019
Available data
1680
bam
1570
bigWig
1053
tsv
792
bed narrowPeak
445
bigBed narrowPeak
364
fastq
178
bed bed3+
176
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
6
csv
4
bed bed3
Organism
357
Homo sapiens
Biosample type
426
cell line
400
primary cell
364
tissue
141
in vitro differentiated cells
4
stem cell
Organ
212
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
brain
2
musculature of body
Project
364
AMP
Genome assembly (visualization)
286
hg19
271
GRCh38
Lab
339
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
Hi-C
month_released!
March, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
364 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
19
1
6
1
liver
67
1
2
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
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