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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
159
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
2
pCHi-C
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
174
Transcription
159
DNA binding
25
DNA accessibility
5
DNA methylation
Target of assay
74
histone modification
73
histone
48
narrow histone mark
46
control
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
10
October, 2019
8
July, 2019
7
November, 2018
3
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
155
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
365
Homo sapiens
Biosample type
399
cell line
365
tissue
15
in vitro differentiated cells
13
primary cell
Organ
547
connective tissue
501
pancreas
488
adipose tissue
360
liver
310
heart
265
brain
158
bone element
157
kidney
132
blood vessel
132
vasculature
118
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
365
AMP
Genome assembly (visualization)
267
hg19
238
GRCh38
Lab
325
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_title!
Hi-C
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
365 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
pCHi-C
RRBS
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
right lobe of liver
3
10
1
2
1
2
islet of Langerhans
4
ovary
1
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