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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
797
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
797
DNA binding
470
DNA accessibility
38
DNA methylation
Target of assay
558
histone modification
557
histone
296
narrow histone mark
261
broad histone mark
175
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
241
October, 2019
227
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
November, 2017
76
April, 2019
73
July, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
May, 2021
39
November, 2019
35
May, 2024
33
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1815
bam
1688
bigWig
1076
tsv
900
bed narrowPeak
484
bigBed narrowPeak
362
fastq
207
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
172
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2642
Homo sapiens
Biosample type
2651
tissue
1062
primary cell
379
in vitro differentiated cells
312
cell line
10
stem cell
Organ
542
connective tissue
493
pancreas
483
adipose tissue
358
liver
300
heart
297
kidney
183
brain
158
bone element
129
blood vessel
129
vasculature
118
limb
76
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2554
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1775
GRCh38
1716
hg19
Lab
2307
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
Hi-C
month_released!
November, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2651 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
69
68
6
1
7
4
1
1
4
adipose tissue
382
2
3
3
1
liver
167
144
20
1
2
3
1
1
1
kidney
49
26
75
64
13
6
1
1
bone element
84
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