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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
831
ChIP-seq
222
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
831
DNA binding
427
DNA accessibility
36
DNA methylation
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
221
August, 2021
215
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
65
May, 2019
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
31
March, 2020
23
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1817
bam
1699
bigWig
1062
tsv
881
bed narrowPeak
496
bigBed narrowPeak
374
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2617
Homo sapiens
Biosample type
2626
tissue
972
primary cell
590
cell line
390
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
501
pancreas
488
adipose tissue
360
liver
310
heart
298
kidney
265
brain
158
bone element
132
blood vessel
vasculature
118
limb
76
musculature of body
73
artery
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2529
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1751
GRCh38
1672
hg19
Lab
2277
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
Hi-C
month_released!
September, 2018
organ_slims!
vasculature
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
2626 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
1
7
4
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
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