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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
93
single cell RNA-seq
40
ATAC-seq
28
DNase-seq
15
total RNA-seq
10
WGBS
4
pCHi-C
Hi-C
1
RRBS
1
small RNA-seq
Assay category
143
DNA binding
109
Transcription
68
DNA accessibility
11
DNA methylation
Target of assay
101
histone
101
histone modification
61
broad histone mark
40
narrow histone mark
24
control
18
transcription factor
10
RNA binding protein
3
other context
3
other post-translational modification
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
October, 2019
6
March, 2020
3
February, 2020
2
May, 2021
1
October, 2017
Available data
187
bed narrowPeak
173
bigWig
156
bam
112
tsv
101
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
24
fastq
9
bed bedMethyl
9
bigBed bedMethyl
Organism
335
Homo sapiens
Biosample type
335
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
501
pancreas
488
adipose tissue
360
liver
310
heart
298
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
118
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
335
AMP
Genome assembly (visualization)
207
GRCh38
124
hg19
Lab
295
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
Hi-C
organ_slims!
small intestine
BIOSAMPLE
ASSAY
335 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
heart right ventricle
13
17
1
1
2
1
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