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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
Hi-C
4
WGBS
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
30
Transcription
21
DNA accessibility
6
DNA methylation
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
30
August, 2021
28
August, 2017
February, 2021
2
July, 2019
1
February, 2020
1
March, 2020
1
May, 2020
1
November, 2017
Available data
bam
621
bigWig
464
fastq
440
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
vcf
Organism
104
Homo sapiens
Biosample type
71
tissue
32
cell line
1
primary cell
Organ
242
pancreas
201
kidney
193
epithelium
179
heart
104
liver
86
connective tissue
54
eye
49
adipose tissue
46
vasculature
45
blood vessel
40
brain
39
artery
33
musculature of body
20
lung
9
blood
9
bodily fluid
9
bone element
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
36
hg19
Lab
40
Karen Mohlke, UNC
34
AMP-T2D consortium
30
Bing Ren, UCSD
assay_title!
Hi-C
files.file_type!
bam
month_released!
February, 2021
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
STARR-seq
pCHi-C
DNase-seq
whole genome sequencing assay
tissue
liver
23
20
20
3
1
1
right lobe of liver
1
1
1
cell line
HepG2
19
9
2
1
1
primary cell
hepatocyte
1
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