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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
22
DNA binding
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
1
July, 2019
1
March, 2020
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
33
Homo sapiens
Biosample type
32
tissue
1
primary cell
Organ
229
pancreas
209
kidney
180
epithelium
179
heart
106
liver
93
bone element
90
connective tissue
54
eye
49
adipose tissue
46
vasculature
45
blood vessel
40
brain
39
artery
33
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
18
hg19
Lab
33
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
Hi-C
files.file_type!
bam
month_released!
September, 2020
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
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