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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
94
DNA binding
24
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
85
histone
85
histone modification
60
narrow histone mark
25
broad histone mark
12
control
Date released
48
October, 2019
28
May, 2019
19
November, 2017
15
July, 2019
12
February, 2020
2
March, 2020
2
October, 2017
1
February, 2023
Available data
243
bam
219
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
26
tsv
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
127
Homo sapiens
Biosample type
120
tissue
7
primary cell
Organ
906
pancreas
647
connective tissue
619
liver
485
epithelium
480
adipose tissue
262
heart
202
vasculature
200
blood vessel
159
bone element
146
kidney
129
artery
127
brain
82
limb
69
blood
69
bodily fluid
57
eye
42
musculature of body
41
nerve
29
embryo
24
spleen
20
lung
16
skeleton
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
97
GRCh38
90
hg19
Lab
127
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
Hi-C
files.file_type!
bed broadPeak
tagAlign
month_released!
August, 2021
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
temporal lobe
15
1
1
angular gyrus
13
brain
6
1
1
1
layer of hippocampus
8
middle frontal area 46
6
+ See 52 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
See all biosamples
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