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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
139
ChIP-seq
5
WGBS
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
Transcription
139
DNA binding
7
DNA methylation
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
36
August, 2017
20
May, 2022
17
August, 2021
13
December, 2017
9
July, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
March, 2020
2
November, 2018
1
February, 2020
October, 2019
Available data
674
bam
615
bigWig
464
fastq
bed narrowPeak
358
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
345
Homo sapiens
Biosample type
246
tissue
91
cell line
7
primary cell
1
in vitro differentiated cells
Organ
713
pancreas
604
connective tissue
477
adipose tissue
352
epithelium
345
liver
197
heart
156
kidney
151
bone element
86
vasculature
84
blood vessel
69
brain
62
artery
musculature of body
23
embryo
20
lung
15
blood
15
bodily fluid
11
spleen
8
skeleton
7
eye
5
limb
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
345
AMP
Genome assembly (visualization)
184
hg19
163
GRCh38
Lab
309
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
Hi-C
files.file_type!
bed narrowPeak
month_released!
October, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
345 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
166
63
3
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
71
1
2
2
1
primary cell
hepatocyte
5
1
1
in vitro differentiated cells
hepatocyte
1
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