Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
549
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
549
DNA binding
193
Transcription
29
DNA accessibility
4
DNA methylation
1
DNA sequencing
Target of assay
335
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
57
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
312
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
52
November, 2018
40
May, 2022
34
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
681
bam
621
bigWig
464
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
tar
1
bed bed3
1
csv
1
vcf
Organism
781
Homo sapiens
Biosample type
395
cell line
359
tissue
15
in vitro differentiated cells
12
primary cell
Organ
923
pancreas
781
liver
679
connective tissue
508
epithelium
488
adipose tissue
382
heart
349
kidney
281
brain
228
vasculature
223
blood vessel
159
bone element
141
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
19
lung
19
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
781
AMP
Genome assembly (visualization)
617
hg19
530
GRCh38
Lab
711
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
Hi-C
files.file_type!
bigBed bedMethyl
tar
BIOSAMPLE
ASSAY
781 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
375
14
1
2
2
1
tissue
liver
145
167
20
2
3
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
Download