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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
18
DNA binding
2
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
narrow histone mark
Date released
7
December, 2018
7
November, 2018
5
January, 2019
1
March, 2020
1
October, 2017
Available data
22
bam
22
fastq
14
bigWig
12
bed narrowPeak
11
bigBed narrowPeak
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
21
Homo sapiens
Biosample type
21
tissue
Organ
858
pancreas
724
liver
647
connective tissue
477
adipose tissue
461
epithelium
342
heart
334
kidney
203
vasculature
199
blood vessel
164
brain
159
bone element
135
artery
102
limb
73
musculature of body
68
blood
68
bodily fluid
57
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
14
vein
2
intestine
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
21
AMP-T2D consortium
assay_title!
Hi-C
files.file_type!
bigBed bedMethyl
organ_slims!
adrenal gland
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
18
1
1
1
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