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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
46
ATAC-seq
39
ChIP-seq
6
DNase-seq
2
single cell RNA-seq
Assay category
63
Transcription
52
DNA accessibility
39
DNA binding
Target of assay
44
histone
44
histone modification
broad histone mark
20
control
14
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
38
October, 2019
35
February, 2023
5
May, 2019
3
February, 2020
3
July, 2019
2
August, 2021
2
June, 2019
Available data
114
bam
86
bigWig
71
bed narrowPeak
63
tsv
21
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
Organism
154
Homo sapiens
Biosample type
86
tissue
66
cell line
2
primary cell
Organ
859
pancreas
745
liver
639
connective tissue
472
epithelium
471
adipose tissue
338
kidney
333
heart
213
brain
186
vasculature
180
blood vessel
159
bone element
127
artery
84
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
129
GRCh38
94
hg19
Lab
154
AMP-T2D consortium
assay_title!
Hi-C
files.file_type!
cool
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
2
tibial nerve
5
1
19
2
tibial artery
1
1
9
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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