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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
9
Transcription
6
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
14
August, 2017
6
July, 2019
3
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
9
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
70
Homo sapiens
Biosample type
60
tissue
10
primary cell
Organ
859
pancreas
745
liver
639
connective tissue
472
epithelium
471
adipose tissue
333
heart
213
brain
197
kidney
186
vasculature
180
blood vessel
159
bone element
127
artery
84
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
55
hg19
45
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
assay_title!
Hi-C
files.file_type!
hdf5
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
70 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
10
1
4
1
1
1
1
muscle of arm
17
muscle of leg
13
3
1
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
2
1
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