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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
7
total RNA-seq
Hi-C
2
ATAC-seq
1
WGBS
Assay category
66
DNA binding
38
DNA accessibility
7
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
February, 2021
3
February, 2020
1
July, 2019
Available data
108
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
112
Homo sapiens
Biosample type
112
tissue
Organ
886
pancreas
698
liver
477
epithelium
345
kidney
324
heart
206
connective tissue
165
brain
165
vasculature
159
blood vessel
112
limb
97
adipose tissue
75
artery
75
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
112
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
files.file_type!
tagAlign
month_released!
February, 2021
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
forelimb muscle
1
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