Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
134
DNA binding
77
DNA accessibility
10
DNA methylation
1
Transcription
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
14
July, 2019
5
October, 2019
Available data
224
bigWig
211
bam
191
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
Organism
222
Homo sapiens
Biosample type
199
tissue
14
cell line
9
primary cell
Organ
613
liver
520
pancreas
360
epithelium
329
kidney
257
brain
222
heart
205
connective tissue
163
vasculature
157
blood vessel
111
limb
101
bone element
90
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
222
AMP
Genome assembly (visualization)
196
GRCh38
115
hg19
Lab
182
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_title!
Hi-C
files.file_type!
tsv
organ_slims!
stomach
organ_slims!!
stomach
BIOSAMPLE
ASSAY
222 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
See all biosamples
Download