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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
Hi-C
4
ATAC-seq
2
Capture-C
2
total RNA-seq
1
snATAC-seq
Assay category
5
DNA accessibility
2
Transcription
Date released
4
February, 2023
2
August, 2021
2
May, 2021
February, 2021
1
May, 2022
Available data
bam
2613
bigWig
1794
bed narrowPeak
1312
fastq
1042
bigBed narrowPeak
1041
tsv
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
266
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
10
bed bed3
4
tar
3
bed bedgraph
3
bedpe bed3+
2
csv
2
ibed
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
primary cell
1
tissue
Organ
6
connective tissue
1
musculature of body
Project
9
AMP
Genome assembly (visualization)
9
hg19
Lab
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
assay_title!
Hi-C
files.file_type!
bam
month_released!
February, 2021
BIOSAMPLE
ASSAY
9 results
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Clear Filters
ATAC-seq
Capture-C
total RNA-seq
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
tissue
skeletal muscle tissue
1
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