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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
whole genome sequencing assay
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
1
DNA sequencing
Date released
134
May, 2022
19
September, 2020
1
August, 2021
Available data
3111
bam
2903
bigWig
1576
tsv
1504
bed narrowPeak
1357
fastq
808
bigBed narrowPeak
398
tagAlign
153
zippedFastqFolder
135
bed broadPeak
99
txt
98
bigBed broadPeak
81
bed bed3+
32
bed bedMethyl
32
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
4
tar
3
bedpe bed3+
3
csv
2
ibed
1
tagAlign bed3+
1
vcf
Organism
154
Homo sapiens
Biosample type
153
primary cell
1
cell line
Organ
80
epithelium
80
pancreas
1
liver
Project
153
HPAP
1
AMP
Lab
153
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
assay_title!
Hi-C
month_released!
June, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
154 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
whole genome sequencing assay
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
HepG2
1
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