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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
9
Transcription
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
90
Homo sapiens
Biosample type
76
tissue
14
primary cell
Organ
932
pancreas
787
liver
681
connective tissue
516
epithelium
489
adipose tissue
390
heart
267
brain
231
vasculature
225
blood vessel
212
kidney
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
71
hg19
53
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
Hi-C
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2023
October, 2017
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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