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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
587
ChIP-seq
198
total RNA-seq
36
ATAC-seq
8
DNase-seq
5
WGBS
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
587
DNA binding
202
Transcription
44
DNA accessibility
7
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
127
histone modification
126
histone
119
control
82
recombinant protein
68
narrow histone mark
58
RNA binding protein
58
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
49
October, 2019
40
May, 2022
34
August, 2021
11
February, 2021
9
July, 2019
8
February, 2023
5
December, 2019
5
January, 2019
2
February, 2020
2
June, 2019
2
March, 2020
Available data
731
bam
652
bigWig
476
bed narrowPeak
464
fastq
384
bigBed narrowPeak
179
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
14
bed bed3+
5
bed bed3
4
txt
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
csv
1
vcf
Organism
846
Homo sapiens
Biosample type
419
tissue
399
cell line
15
in vitro differentiated cells
13
primary cell
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
846
AMP
Genome assembly (visualization)
665
hg19
570
GRCh38
Lab
776
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
Hi-C
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
846 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
tibial nerve
35
5
1
2
right lobe of liver
10
3
1
2
1
2
acetabular part of hip bone
1
1
ilium
1
1
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cell line
HepG2
378
14
1
1
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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