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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
total RNA-seq
5
STARR-seq
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
15
DNA binding
10
Transcription
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
1
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
1
vcf
Organism
32
Homo sapiens
Biosample type
30
cell line
2
tissue
Organ
27
liver
2
kidney
2
pancreas
Project
32
AMP
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
3041
AMP-T2D consortium
321
Klaus Kaestner, Upenn
193
Kyle Gaulton, UCSD
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
32
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
month_released!
January, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
STARR-seq
ATAC-seq
whole genome sequencing assay
cell line
HepG2
15
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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