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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
9
total RNA-seq
5
STARR-seq
Hi-C
1
whole genome sequencing assay
Assay category
17
DNA binding
9
Transcription
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
broad histone mark
Date released
32
August, 2021
Available data
13
bed narrowPeak
13
bigWig
9
tsv
1
vcf
Organism
32
Homo sapiens
Biosample type
32
cell line
Organ
29
liver
2
kidney
pancreas
Project
32
AMP
Genome assembly (visualization)
13
hg19
Lab
2836
AMP-T2D consortium
218
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
32
Bing Ren, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
organ_slims!
pancreas
stomach
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
STARR-seq
whole genome sequencing assay
cell line
HepG2
17
9
2
1
HEK293T
2
Synthesized DNA
1
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