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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
43
ChIP-seq
6
ATAC-seq
4
pCHi-C
3
DNase-seq
3
small RNA-seq
2
WGBS
1
RNA microarray
Assay category
401
Transcription
43
DNA binding
9
DNA accessibility
2
DNA methylation
Target of assay
26
control
11
transcription factor
6
histone
6
histone modification
5
RNA binding protein
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
2
February, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
449
bam
424
bigWig
403
tsv
50
fastq
24
bed narrowPeak
21
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
459
Homo sapiens
Biosample type
457
tissue
2
primary cell
1
in vitro differentiated cells
Organ
749
pancreas
733
liver
558
connective tissue
487
epithelium
434
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
69
blood
69
bodily fluid
64
musculature of body
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
460
AMP
Genome assembly (visualization)
425
hg19
424
GRCh38
Lab
460
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
month_released!
August, 2017
BIOSAMPLE
ASSAY
460 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNase-seq
small RNA-seq
WGBS
RNA microarray
tissue
adipose tissue
382
3
1
spleen
20
1
1
1
2
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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