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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
84
RNA microarray
79
total RNA-seq
30
DNase-seq
16
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
86
Transcription
47
DNA accessibility
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
150
February, 2021
86
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
12
February, 2020
9
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
301
bam
269
bigWig
205
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
41
bed broadPeak
32
bigBed broadPeak
30
bed bed3+
15
fastq
5
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
433
Homo sapiens
Biosample type
423
tissue
10
primary cell
Organ
934
pancreas
753
liver
678
connective tissue
510
epithelium
490
adipose tissue
298
heart
283
brain
vasculature
224
kidney
219
blood vessel
159
bone element
139
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
432
AMP
1
T1D
Genome assembly (visualization)
277
GRCh38
222
hg19
Lab
432
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
Hi-C
month_released!
August, 2021
organ_slims!
vasculature
BIOSAMPLE
ASSAY
433 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
RRBS
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 91 more…
primary cell
astrocyte of the cerebellum
3
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 1 more…
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