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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
7
June, 2019
1
February, 2020
1
July, 2019
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
61
Homo sapiens
Biosample type
56
tissue
5
primary cell
Organ
pancreas
713
liver
634
connective tissue
470
adipose tissue
467
epithelium
241
heart
213
brain
209
kidney
180
vasculature
174
blood vessel
159
bone element
125
artery
84
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
27
nerve
25
embryo
21
spleen
20
lung
18
ureter
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
61
AMP-T2D consortium
assay_title!
Hi-C
month_released!
August, 2021
organ_slims!
pancreas
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
61 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
1
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