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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
7
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
histone
6
histone modification
4
broad histone mark
4
control
3
other context
3
other post-translational modification
3
transcription factor
2
narrow histone mark
Date released
9
November, 2018
December, 2018
1
January, 2019
1
March, 2020
1
October, 2017
Available data
11
bam
11
fastq
7
bigWig
5
bed narrowPeak
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
12
Homo sapiens
Biosample type
12
tissue
Organ
786
pancreas
685
liver
605
connective tissue
459
adipose tissue
423
epithelium
323
kidney
293
heart
160
vasculature
159
bone element
155
blood vessel
121
artery
96
brain
69
limb
58
eye
57
musculature of body
41
blood
41
bodily fluid
25
embryo
20
lung
19
nerve
18
ureter
16
skeleton
12
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
12
AMP
Genome assembly (visualization)
7
GRCh38
5
hg19
Lab
12
AMP-T2D consortium
assay_title!
Hi-C
month_released!
December, 2018
organ_slims!
esophagus
target.investigated_as!
histone
BIOSAMPLE
ASSAY
12 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
7
2
1
1
1
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