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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
ChIP-seq
189
total RNA-seq
23
ATAC-seq
Hi-C
4
WGBS
3
DNase-seq
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
464
DNA binding
193
Transcription
26
DNA accessibility
6
DNA methylation
1
DNA sequencing
Target of assay
289
transcription factor
108
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
40
May, 2022
November, 2018
33
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
590
bam
532
bigWig
373
fastq
353
bed narrowPeak
271
bigBed narrowPeak
174
tsv
86
tagAlign
56
bed broadPeak
56
bigBed broadPeak
9
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
tar
1
bed bed3
1
csv
1
vcf
Organism
695
Homo sapiens
Biosample type
351
tissue
318
cell line
13
in vitro differentiated cells
13
primary cell
Organ
921
pancreas
695
liver
672
connective tissue
508
epithelium
485
adipose tissue
379
heart
350
kidney
278
brain
226
vasculature
221
blood vessel
159
bone element
140
artery
118
limb
90
musculature of body
60
eye
46
blood
46
bodily fluid
43
nerve
37
embryo
20
lung
20
vein
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
695
AMP
Genome assembly (visualization)
537
hg19
447
GRCh38
Lab
626
AMP-T2D consortium
40
Karen Mohlke, UNC
29
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
17
inconsistent control read length
2
inconsistent control run_type
assay_title!
Hi-C
month_released!
November, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
695 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
140
167
20
3
1
1
1
1
right lobe of liver
9
3
1
1
1
2
cell line
HepG2
298
14
1
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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