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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
43
DNA binding
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
May, 2021
341
May, 2020
311
August, 2021
286
August, 2017
263
October, 2019
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
83
July, 2019
80
April, 2019
73
September, 2018
59
September, 2020
58
November, 2019
53
October, 2018
52
March, 2020
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
4
March, 2019
4
March, 2023
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
104
bed narrowPeak
64
xls
57
txt
49
bam
45
bigWig
24
tagAlign
3
bed bed3+
1
vcf
Organism
311
Homo sapiens
Biosample type
226
tissue
43
cell line
38
in vitro differentiated cells
4
primary cell
Organ
129
kidney
92
heart
34
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
connective tissue
3
pancreas
2
artery
1
adipose tissue
Project
311
AMP
Genome assembly (visualization)
105
GRCh38
54
hg19
Lab
150
AMP-T2D consortium
127
Katalin Susztak, Upenn
34
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
Hi-C
month_released!
May, 2021
organ_slims!
connective tissue
nerve
BIOSAMPLE
ASSAY
311 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
primary cell
hepatocyte
4
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