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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
13
small RNA-seq
12
RRBS
11
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
54
Transcription
23
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
3
control
Date released
680
February, 2021
338
May, 2021
289
October, 2019
280
August, 2021
212
June, 2019
169
August, 2017
147
February, 2023
147
May, 2020
118
May, 2019
92
July, 2019
91
November, 2017
80
April, 2019
56
May, 2022
47
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
34
December, 2018
31
December, 2017
28
November, 2018
25
January, 2019
23
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
December, 2019
5
March, 2023
2
June, 2018
1
August, 2018
1
September, 2018
Available data
73
bigWig
71
bam
54
tsv
20
bed bedMethyl
20
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
92
Homo sapiens
Biosample type
63
tissue
29
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
liver
10
musculature of body
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
92
AMP
Genome assembly (visualization)
76
hg19
68
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
HiChIP
MPRA
organ_slims!
liver
pancreas
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
gastrocnemius medialis
4
heart
2
1
1
+ See 21 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 18 more…
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