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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
43
single cell RNA-seq
total RNA-seq
14
ATAC-seq
Assay category
74
DNA binding
43
Transcription
14
DNA accessibility
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
110
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
83
fastq
74
bam
48
bigWig
45
bed narrowPeak
45
bigBed narrowPeak
19
zippedFastqFolder
Organism
131
Homo sapiens
Biosample type
88
tissue
43
primary cell
Organ
54
pancreas
23
adipose tissue
23
connective tissue
14
kidney
3
epithelium
Project
88
AMP
43
HPAP
Genome assembly (visualization)
59
GRCh38
45
hg19
Lab
74
AMP-T2D consortium
43
Klaus Kaestner, Upenn
14
Katalin Susztak, Upenn
Audit category:
1
inconsistent control read length
assay_title!
HiChIP
total RNA-seq
BIOSAMPLE
ASSAY
131 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
body of pancreas
33
endocrine pancreas
16
kidney
3
11
subcutaneous adipose tissue
12
omental fat pad
11
+ See 1 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
2
pancreatic beta cell
1
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